Function reference
EDP connections
Set, get manage connections to EDP using profiles or environments variables Connection to EDP hosts
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autoconnect()
- tries to connect, using environment variables or the default profile
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connect()
- connect to the QuartzBio EDP API and return the connection
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connect_with_profile()
- connect to the QuartzBio EDP API using a saved profile
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get_connection()
- get the default connection if any
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read_connection_profile()
- read a connection profile
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save_connection_profile()
- save a connection profile
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set_connection()
- set the default connection
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test_connection()
- test a connection
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params
- shared roxygen params
Vaults, Files, Folders
Vaults, Files, Folders management Vaults and Objects
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Vault_create()
- creates a new EDP vault or updates an existing one.
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Vault_update()
- updates a vault
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Folder_create()
- creates a folder.
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File_download()
- utility function that downloads an EDP File into a local file
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File_get_download_url()
- fetches the download URL of a file.
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File_query()
- queries the content of a file.
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File_read()
- convenience function to download a file into memory, just a wrapper over File_download()
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File_upload()
- uploads a file
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Dataset_create()
- creates a new Dataset.
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Dataset_import()
- imports data into an existing dataset
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Dataset_query()
- queries data into a dataset.
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fetch_all()
- fetch all the pages for a possibly incomplete paginated API result
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fetch_next()
- fetch the next page of data if any
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fetch_prev()
- fetch the previous page of data if any
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delete()
fetch()
fetch_vaults()
- deletes an object from EDP
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Dataset_query()
- queries data into a dataset.
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File_query()
- queries the content of a file.
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filters()
- parses the maths-like syntax of filters.
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Dataset()
- fetches a dataset.
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DatasetField()
- fetches a field metadata of a dataset by ID or (datasetid, field_name)
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DatasetField_create()
- creates a new Dataset Field.
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DatasetField_update()
- updates an existing Dataset Field.
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DatasetFields()
- fetches the fields of a dataset.
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Dataset_create()
- creates a new Dataset.
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Dataset_import()
- imports data into an existing dataset
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Dataset_query()
- queries data into a dataset.
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Datasets()
- fetches a list of datasets.
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File()
- fetches a file by id, full_path or (vault_id, path)
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File_download()
- utility function that downloads an EDP File into a local file
-
File_get_download_url()
- fetches the download URL of a file.
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File_query()
- queries the content of a file.
-
File_read()
- convenience function to download a file into memory, just a wrapper over File_download()
-
File_upload()
- uploads a file
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Files()
- fetches a list of files.
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Folder()
- fetches a folder by id, full_path or (vault_id, path)
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Folder_create()
- creates a folder.
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Folders()
- fetches a list of folders.
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Object()
- fetches an object.
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Object_create()
- creates an Object.
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Object_update()
- updates an Object.
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Objects()
- fetches a list of objects (files, folders, datasets)
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Task()
- fetches a task.
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Task_wait_for_completion()
- Waits for a task to be completed (or failed).
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Tasks()
- fetches a list of tasks.
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User()
- fetches user information.
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Vault()
- fetches a vault
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Vault_create()
- creates a new EDP vault or updates an existing one.
-
Vault_update()
- updates a vault
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Vaults()
- fetches a list of vaults
-
autoconnect()
- tries to connect, using environment variables or the default profile
-
connect()
- connect to the QuartzBio EDP API and return the connection
-
connect_with_profile()
- connect to the QuartzBio EDP API using a saved profile
-
fetch_all()
- fetch all the pages for a possibly incomplete paginated API result
-
fetch_next()
- fetch the next page of data if any
-
fetch_prev()
- fetch the previous page of data if any
-
filters()
- parses the maths-like syntax of filters.
-
delete()
fetch()
fetch_vaults()
- deletes an object from EDP
-
get_connection()
- get the default connection if any
-
old_params
- shared old roxygen params
-
params
- shared roxygen params
-
read_connection_profile()
- read a connection profile
-
save_connection_profile()
- save a connection profile
-
set_connection()
- set the default connection
-
test_connection()
- test a connection
Legacy former solvebio API
Former solvebio api functions. Compatible with the new connection functions.
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Annotator.annotate()
- Annotate a data table/frame with additional fields.
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Application.all()
- Retrieve the metadata about all application on QuartzBio EDP available to the current user.
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Application.create()
- Application.create
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Application.delete()
- Application.delete
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Application.retrieve()
- Retrieve the metadata about a specific application QuartzBio EDP.
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Application.update()
- Application.update
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Beacon.all()
- Beacon.all
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Beacon.create()
- Beacon.create
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Beacon.delete()
- Beacon.delete
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Beacon.query()
- Beacon.query
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Beacon.retrieve()
- Beacon.retrieve
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Beacon.update()
- Beacon.update
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BeaconSet.all()
- BeaconSet.all
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BeaconSet.create()
- BeaconSet.create
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BeaconSet.delete()
- BeaconSet.delete
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BeaconSet.query()
- BeaconSet.query
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BeaconSet.retrieve()
- BeaconSet.retrieve
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BeaconSet.update()
- BeaconSet.update
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Dataset.activity()
- Dataset.activity
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Dataset.all()
- Retrieves the metadata about datasets on QuartzBio EDP.
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Dataset.count()
- Dataset.count
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Dataset.create()
- Dataset.create
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Dataset.data()
- Dataset.data
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Dataset.delete()
- Dataset.delete
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Dataset.disable_global_beacon()
- Dataset.disable_global_beacon
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Dataset.enable_global_beacon()
- Dataset.enable_global_beacon
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Dataset.facets()
- Dataset.facets
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Dataset.fields()
- Dataset.fields
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Dataset.get_by_full_path()
- Dataset.get_by_full_path
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Dataset.get_global_beacon_status()
- Dataset.get_global_beacon_status
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Dataset.get_or_create_by_full_path()
- Dataset.get_or_create_by_full_path
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Dataset.query()
- Dataset.query
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Dataset.retrieve()
- Dataset.retrieve
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Dataset.template()
- Dataset.template
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Dataset.update()
- Dataset.update
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DatasetCommit.all()
- DatasetCommit.all
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DatasetCommit.delete()
- DatasetCommit.delete
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DatasetCommit.retrieve()
- DatasetCommit.retrieve
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DatasetExport.all()
- DatasetExport.all
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DatasetExport.create()
- DatasetExport.create
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DatasetExport.delete()
- DatasetExport.delete
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DatasetExport.get_download_url()
- DatasetExport.get_download_url
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DatasetExport.retrieve()
- DatasetExport.retrieve
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DatasetField.all()
- DatasetField.all
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DatasetField.create()
- DatasetField.create
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DatasetField.facets()
- DatasetField.facets
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DatasetField.retrieve()
- DatasetField.retrieve
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DatasetField.update()
- DatasetField.update
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DatasetImport.all()
- DatasetImport.all
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DatasetImport.create()
- DatasetImport.create
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DatasetImport.delete()
- DatasetImport.delete
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DatasetImport.retrieve()
- DatasetImport.retrieve
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DatasetMigration.all()
- DatasetMigration.all
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DatasetMigration.create()
- DatasetMigration.create
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DatasetMigration.delete()
- DatasetMigration.delete
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DatasetMigration.retrieve()
- DatasetMigration.retrieve
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DatasetTemplate.all()
- DatasetTemplate.all
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DatasetTemplate.create()
- DatasetTemplate.create
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DatasetTemplate.delete()
- DatasetTemplate.delete
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DatasetTemplate.retrieve()
- DatasetTemplate.retrieve
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DatasetTemplate.update()
- DatasetTemplate.update
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Expression.evaluate()
- Evaluate a QuartzBio EDP expression.
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GlobalSearch.facets()
- GlobalSearch.facets
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GlobalSearch.request()
- GlobalSearch.request
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GlobalSearch.search()
- GlobalSearch.search
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GlobalSearch.subjects()
- GlobalSearch.subjects
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GlobalSearch.subjects_count()
- GlobalSearch.subjects_count
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Object.all()
- Retrieves the metadata about all objects on EDP accessible to the current user.
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Object.create()
- Object.create
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Object.data()
- Object.data
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Object.delete()
- Object.delete
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Object.disable_global_beacon()
- Object.disable_global_beacon
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Object.enable_global_beacon()
- Object.enable_global_beacon
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Object.fields()
- Object.fields
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Object.get_by_full_path()
- Object.get_by_full_path
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Object.get_by_path()
- Object.get_by_path
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Object.get_download_url()
- Object.get_download_url
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Object.get_global_beacon_status()
- Object.get_global_beacon_status
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Object.get_or_upload_file()
- Object.get_or_upload_file
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Object.query()
- Object.query
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Object.retrieve()
- Object.retrieve
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Object.update()
- Object.update
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Object.upload_file()
- Object.upload_file
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SavedQuery.all()
- SavedQuery.all
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SavedQuery.create()
- SavedQuery.create
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SavedQuery.delete()
- SavedQuery.delete
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SavedQuery.retrieve()
- SavedQuery.retrieve
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SavedQuery.update()
- SavedQuery.update
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Task.all()
- Task.all
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Task.follow()
- Task.follow
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Task.retrieve()
- Task.retrieve
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User.retrieve()
- Retrieves information about the current user
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Vault.all()
- Vault.all
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Vault.create()
- Vault.create
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Vault.create_dataset()
- Vault.create_dataset
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Vault.create_folder()
- Vault.create_folder
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Vault.datasets()
- Vault.datasets
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Vault.delete()
- Vault.delete
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Vault.files()
- Vault.files
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Vault.folders()
- Vault.folders
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Vault.get_by_full_path()
- Vault.get_by_full_path
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Vault.get_or_create_by_full_path()
- Vault.get_or_create_by_full_path
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Vault.get_personal_vault()
- Vault.get_personal_vault
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Vault.objects()
- Vault.objects
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Vault.retrieve()
- Vault.retrieve
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Vault.search()
- Vault.search
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Vault.update()
- Vault.update
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login()
- login
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protectedServer()
- protectedServer
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protectedServerJS()
- protectedServerUI